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Single cell RNA sequencing approaches are instrumental in studies of cell-to-cell variability. 5΄ selective transcriptome profiling approaches allow simultaneous definition of the transcription start size and have advantages over 3΄ selective approaches which just provide internal sequences close to the 3΄ end. Cannabis Serge Gainsbourg Rar. The only currently existing 5΄ selective approach requires costly and labor intensive fragmentation and cell barcoding after cDNA amplification. We developed an optimized 5΄ selective workflow where all the cell indexing is done prior to fragmentation. With our protocol, cell indexing can be performed in the Fluidigm C1 microfluidic device, resulting in a significant reduction of cost and labor. We also designed optimized unique molecular identifiers that show less sequence bias and vulnerability towards sequencing errors resulting in an improved accuracy of molecule counting. We provide comprehensive experimental workflows for Illumina and Ion Proton sequencers that allow single cell sequencing in a cost range comparable to qPCR assays.

Brad Hudson Run Faster Ebook. INTRODUCTION The cell is the minimal building block of any living organism. Investigating the properties of individual cells rather than the average of a group of seemingly identical cells provided important insights in various domains such as cancer (), development (,), immunology () and neurobiology (–). Single cell transcriptome sequencing is a key technology to address this cellular heterogeneity. Since the first sequencing of a single cell transcriptome (), advances in library preparation techniques greatly improved both efficiency and throughput ().